In [1]:
%matplotlib
import matplotlib.pyplot as plt
from IPython.core.display import display

Using matplotlib backend: Qt4Agg
In [2]:
from Dotplot import Dotplot, blosum62, alpha_aa
from DotplotQt import QtDotMediator
from FastaFile import FastaFile
In [3]:
sequences = FastaFile(open("ScRnaPol2.fasta"))
seq = sequences["ScRnaPol2"]
In [4]:
dotplot = Dotplot(seq)
In [5]:
from DotplotQt import QtDotMediator
In [6]:
view = QtDotMediator(dotplot)
display(view.fig)
In [7]:
display(view.fig)
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