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Isaac DT, Berkes CA, English BC, Hocking Murray D, Lee YN, Coady A, Sil A. (2015). Macrophage cell death and transcriptional response are actively triggered by the fungal virulence factor Cbp1 during H. capsulatum infection. Mol Microbiol. 98(5):910-29. doi: 10.1111/mmi.13168. PMID:26288377

Gilmore SA, Voorhies M, Gebhart D, Sil A. (2015). Genome-Wide Reprogramming of Transcript Architecture by Temperature Specifies the Developmental States of the Human Pathogen Histoplasma. PLoS Genet. 11(7):e1005395. doi: 10.1371/journal.pgen. 1005395. eCollection. PMID:26177267

Coady A, Sil A. (2015). MyD88-dependent signaling drives host survival and early cytokine production during Histoplasma capsulatum infection Infect Immun. 83(4):1265-75. doi: 10.1128/IAI.02619-14.

Gilmore SA, Naseem S, Konopka JB, Sil A. (2013). N-acetylglucosamine (GlcNAc) Triggers a Rapid, Temperature-Responsive Morphogenetic Program in Thermally Dimorphic Fungi. PLoS Genet. 9(9):e1003799

Sil A, Andrianopoulos A. (2014). Thermally Dimorphic Human Fungal Pathogens--Polyphyletic Pathogens with a Convergent Pathogenicity Trait. Cold Spring Harb Perspect Med. 5(8):a019794. doi: 10.1101/cshperspect.a019794. Review.

Beyhan S, Gutierrez M, Voorhies M, Sil A. (2013) A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen. PLoS Biol. 11(7):e1001614. doi: 10.1371/journal.pbio.1001614.

Inglis DO, Voorhies M, Hocking Murray DR, Sil A. (2013) Comparative transcriptomics of infectious spores from the fungal pathogen Histoplasma capsulatum reveals a core set of transcripts that specify infectious and pathogenic states. Eukaryot Cell. 12(6):828-52. doi: 10.1128/EC.00069-13.

Isaac DT, Coady A, Van Prooyen N, Sil A. (2013)The 3-hydroxy-methylglutaryl coenzyme A lyase HCL1 is required for macrophage colonization by human fungal pathogen Histoplasma capsulatum. Infect Immun. 81(2):411-20. doi: 10.1128/IAI.00833-12.

Muhammed M, Feldmesser M, Shubitz LF, Lionakis MS, Sil A, Wang Y, Glavis-Bloom J, Lewis RE, Galgiani JN, Casadevall A, Kontoyiannis DP, Mylonakis E. (2012)
Mouse models for the study of fungal pneumonia: a collection of detailed experimental protocols for the study of Coccidioides, Cryptococcus, Fusarium, Histoplasma and combined infection due to Aspergillus-Rhizopus. Virulence. 3(3):329-38. doi: 10.4161/viru.20142.

Cain CW, Lohse MB, Homann OR, Sil A, Johnson AD. (2012) A conserved transcriptional regulator governs fungal morphology in widely diverged species. Genetics. 190(2):511-21. doi: 10.1534/genetics.111.134080.

Hwang, L.H., Seth, E., Gilmore S.A., and Sil, A . (2012) SRE1 Regulates Iron-Dependent and -Independent Pathways in the Fungal Pathogen Histoplasma capsulatum. Eukaryot Cell. 11(1):16-25. Epub Nov 23 2011, doi: 10.1128/?EC.05274-11

Voorhies, M., Foo, C.K., and Sil, A . (2011) Experimental annotation of the human pathogen Histoplasma capsulatum transcribed regions using high-resolution tiling arrays. BMC Microbiol.11:216.
Inglis, D.O., Berkes, C.A., Hocking Murray, D., and Sil, A . (2010) Conidia but not yeast cells of the fungal pathogen Histoplasma capsulatum trigger a Type I interferon innate immune response in murine macrophages. Infection and Immunity. 78(9): 3871-3882.
Webster, R.H. and Sil, A. (2008) Conserved factors Ryp2 and Ryp3 control cell morphology and infectious spore formation in the fungal pathogen Histoplasma capsulatum. Proc Natl Acad Sci. 105(38):14573-8
Hwang, L.H. , Mayfield, J.A., Rine, J., Sil A (2008). Histoplasma requires SID1, a member of an iron-regulated siderophore gene cluster, for host colonization. PLoS Pathog. 4(4):e1000044
Nguyen, V.Q., and Sil, A. (2008) Temperature-induced switch to the pathogenic yeast form of Histoplasma capsulatum requires Ryp1, a conserved transcriptional regulator. Proc Natl Acad Sci. 105(12):4880-5.
Gebhart, D., Bahrami, A., and Sil, A. (2006) Identification of a copper-inducible promoter in Histoplasma capsulatum. Eukaryotic Cell, 5(6): 935-944

Nittler, M. P., Hocking Murray, D., Foo, C., and Sil, A. (2005). Identification of Histoplasma capsulatum Transcripts Induced in Response to Reactive Nitrogen Intermediates. Molecular Biology of the Cell. 16: 4792-4813.

Histobase annotations.

Hwang, L., Hocking Murray, D., Bahrami, A., Andersson, M., Rine, J., and Sil, A. (2003) Identifying Phase-Specific Genes in the Fungal Pathogen Histoplasma capsulatum Using a Genomic Shotgun Microarray. Molecular Biology of the Cell, 14: 2314-2326

Histobase annotations.

McBride, H.J.*, Sil, A.*, Measday, V., Yu, Y., Moffat. J., Maxon, M.E., Herskowitz, I., Andrews, B., and Stillman, D.J. (2001) The Protein Kinase Pho85 is Required for Asymmetric Localization of the Ash1 Protein in Saccharomyces cerevisiae. Molecular Microbiology, 42(2): 345-53.
*These two authors contributed equally to this work.
Takizawa, P.A., Sil, A., Swedlow, J.R., Herskowitz, I., Vale, R.D. (1997) Actin-dependent localization of an RNA encoding a cell-fate determinant in yeast. Nature, 389(6646):90-93.
Sil, A. and Herskowitz, I.(1996) Identification of an Asymmetrically Localized Determinant Required for Lineage-Specific Transcription of the Yeast HO Gene. Cell, 84: 711-722.

Book chapters

Sil, A. (2005) Using genomics to study the life cycle of H. capsulatum. "Fungal Genomics" (Ed. Brown, A.J.P.) Mycota XIII, Springer-Verlag, Heidelberg, pp219-234.

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