Data Sources for HistoBase
Sil Lab Data
- Whole Genome Tiling Array
- Funding for this website and for the whole genome tiling array
was provided by the Burroughs Wellcome Fund. A manuscript on
the generation and analysis of this data is currently in preparation.
- Yeast vs. Mycelia Shotgun Array
- Gene annotations based on competitive hybridization of yeast and
mycelial RNA samples (YvM annotations) are taken from
Mol. Biol. Cell 14:2314
- Nitrositive Stress Tiling Array
- Transcripts induced by nitrositive stress identified by focused tiling
arrays are taken from
Mol. Biol. Cell 16:4792
Other Data Sources
- Histoplasma capsulatum G217B and G186A
- Genome assemblies and gene sets for the G217B and G186A
strains were provided by the
Genome Sequencing Center (GSC) at Washington University.
(http://genome.wustl.edu/genomes/view/histoplasma_capsulatum/)
- Histoplasma capsulatum WU24
- The genome assembly, gene set, and domain annotations
for the WU24 strain
were obtained from the BROAD Institute. (http://www.broad.mit.edu/annotation/genome/histoplasma_capsulatum.2/Home.html)
- Aspergillus fumigatus
- The genome assembly and gene set for Aspergillus fumigatus were obtained from the joint project between TIGR and the
Wellcome Trust Sanger Institute.
For restrictions on using this data, please see
http://www.tigr.org/tdb/e2k1/afu1/release.shtml
.
- Aspergillus nidulans
- The genome assembly and gene set for Aspergillus nidulans
were obtained from the BROAD Institute.
(http://www.broad.mit.edu/annotation/genome/aspergillus_nidulans/Home.html)
- Aspergillus oryzae
- The genome assembly and gene set for Aspergillus oryzae
were obtained from DOGAN.
(http://www.bio.nite.go.jp/dogan/MicroTop?GENOME_ID=ao)
- Candida albicans
- The genome assembly and gene set for Candida albicans
were obtained from the Candida Genome Database (CGD).
- Coccidioides immitis
- The genome assembly and gene set for Coccidioides immitis
were obtained from the BROAD Institute.
(http://www.broad.mit.edu/annotation/genome/coccidioides_immitis/Home.html)
- Cryptococcus neoformans
- The genome assembly and gene set for Cryptococcus neoformans
were obtained from the BROAD Institute.
(http://www.broad.mit.edu/annotation/genome/cryptococcus_neoformans/Home.html)
- Fusarium graminearum
- The genome assembly and gene set for Fusarium graminearum
were obtained from the BROAD Institute.
(http://www.broad.mit.edu/annotation/genome/fusarium_graminearum/Home.html)
- Magnaporthe grisea
- The genome assembly and gene set for Magnaporthe grisea
were obtained from the BROAD Institute.
(http://www.broad.mit.edu/annotation/fungi/magnaporthe/)
- Neurospora crassa
- The genome assembly and gene set for Neurospora crassa
were obtained from the BROAD Institute.
(http://www.broad.mit.edu/annotation/genome/neurospora/Home.html)
- Saccharomyces cerevisiae
- The genome assembly and gene set for Saccharomyces cerevisiae
were obtained from the Saccharomyces Genome Database (SGD).
- Schizosaccharomyces pombe
- The genome assembly and gene set for Schizosaccharomyces pombe
were obtained from the Wellcome Trust Sanger Institute. (http://www.sanger.ac.uk/Projects/S_pombe/)
- Ustilago maydis
- The genome assembly and gene set for Ustilago maydis
were obtained from the BROAD Institute.
(http://www.broad.mit.edu/annotation/genome/ustilago_maydis/Home.html)
- Yarrowia lipolytica
- The genome assembly and gene set for Yarrowia lipolytica
were obtained from Genolevures.
(http://cbi.labri.fr/Genolevures/elt/YALI)
