Tue, 7 March 2023 12:00:00 PST
As of 3/7/2023, genome browsing has been temporarily been disabled due to a possible vulnerability in Gbrowse2, which is no longer maintained. We expect to re-introduce genome browsing later in 2023 using either jbrowse or the Sil Lab's internal genome browsing code.
Fri, 6 April 2010 11:00:00 PDT
All of the data and interfaces previously existing on HistoBase should now be available. We apologize for any inconvenience that the down time may have caused. Please contact Mark.Voorhies@ucsf.edu if you notice any bugs or missing data.
Mon, 29 March 2010 11:00:00 PDT
Updated broken gene links for Fusarium graminearum and Aspergillus nidulans. Fusarium graminearum now links to the BROAD Fusarium multihome database. Aspergillus nidulans now links to AspGD.
Coccidioides immitis and Histoplasma capsulatum WU24 (Nam1) now link to the BROAD's comparative Dimorph Fungal Database rather than the strain-specific databases. Additionally, Michael Koehrsen has added links to HistoBase from the BROAD's WU24 gene pages.
Sat, 20 March 2010 20:30:02 PDT
The results page for BLAT searches now has an option to download all hits in Gbrowse annotation format. Previously, the Gbrowse annotation had to be copied from the alignment details page for each hit.
Sat, 20 March 2010 20:30:01 PDT
Expression profiles from two microarray experiments are now available on the G217B gene details pages:
Sat, 20 March 2010 20:30:00 PDT
HistoBase now has two batch download tools:
Both tools are queried with a list of UIDs from the G217B or G186AR oligo arrays (UIDs are listed under "Oligos" in the gene details pages; e.g., G217Borfs1.21j16 for ABC1). Querying by gene name is not currently supported.
Tue, 18 March 2008 17:53:47 PDT
Finished several small updates to the site layout and navigation.
Fri, 11 May 2007 12:54:25 PDT
HistoBase, a functional annotation database for Histoplasma capsulatum, is now publicly accessible at http://histo.ucsf.edu/.
Bug fixes, data updates, and new features will be posted to this site.